Molecular Detection of 10 of the Most Unwanted Alien Forest Pathogens in Canada Using Real-Time PCR
Identifieur interne : 000537 ( Main/Exploration ); précédent : 000536; suivant : 000538Molecular Detection of 10 of the Most Unwanted Alien Forest Pathogens in Canada Using Real-Time PCR
Auteurs : Josyanne Lamarche [Canada] ; Amélie Potvin [Canada] ; Gervais Pelletier [Canada] ; Don Stewart [Canada] ; Nicolas Feau [Canada] ; Dario I. O. Alayon [Canada] ; Angela L. Dale [Canada] ; Aaron Coelho [Canada] ; Adnan Uzunovic [Canada] ; Guillaume J. Bilodeau [Canada] ; Stephan C. Brière [Canada] ; Richard C. Hamelin [Canada] ; Philippe Tanguay [Canada]Source :
- PLoS ONE [ 1932-6203 ] ; 2015.
Abstract
Invasive alien tree pathogens can cause significant economic losses as well as large-scale damage to natural ecosystems. Early detection to prevent their establishment and spread is an important approach used by several national plant protection organizations (NPPOs). Molecular detection tools targeting 10 of the most unwanted alien forest pathogens in Canada were developed as part of the TAIGA project (
Url:
DOI: 10.1371/journal.pone.0134265
PubMed: 26274489
PubMed Central: 4537292
Affiliations:
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sort="Potvin, Amelie" uniqKey="Potvin A" first="Amélie" last="Potvin">Amélie Potvin</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation></author><author><name sortKey="Pelletier, Gervais" sort="Pelletier, Gervais" uniqKey="Pelletier G" first="Gervais" last="Pelletier">Gervais Pelletier</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation></author><author><name sortKey="Stewart, Don" sort="Stewart, Don" uniqKey="Stewart D" first="Don" last="Stewart">Don Stewart</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation></author><author><name sortKey="Feau, Nicolas" sort="Feau, Nicolas" uniqKey="Feau N" first="Nicolas" last="Feau">Nicolas Feau</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Alayon, Dario I O" sort="Alayon, Dario I O" uniqKey="Alayon D" first="Dario I. O." last="Alayon">Dario I. O. Alayon</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Dale, Angela L" sort="Dale, Angela L" uniqKey="Dale A" first="Angela L." last="Dale">Angela L. Dale</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>FPInnovations, Vancouver, BC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>FPInnovations, Vancouver, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Coelho, Aaron" sort="Coelho, Aaron" uniqKey="Coelho A" first="Aaron" last="Coelho">Aaron Coelho</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>FPInnovations, Vancouver, BC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>FPInnovations, Vancouver, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Uzunovic, Adnan" sort="Uzunovic, Adnan" uniqKey="Uzunovic A" first="Adnan" last="Uzunovic">Adnan Uzunovic</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>FPInnovations, Vancouver, BC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>FPInnovations, Vancouver, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Bilodeau, Guillaume J" sort="Bilodeau, Guillaume J" uniqKey="Bilodeau G" first="Guillaume J." last="Bilodeau">Guillaume J. Bilodeau</name><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Canadian Food Inspection Agency, Pathogen Identification Research Laboratory (PIRL), Ottawa, ON, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Canadian Food Inspection Agency, Pathogen Identification Research Laboratory (PIRL), Ottawa, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Briere, Stephan C" sort="Briere, Stephan C" uniqKey="Briere S" first="Stephan C." last="Brière">Stephan C. Brière</name><affiliation wicri:level="1"><nlm:aff id="aff005"><addr-line>Canadian Food Inspection Agency, Pathogen Pathology Laboratory (PPL), Ottawa, ON, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Canadian Food Inspection Agency, Pathogen Pathology Laboratory (PPL), Ottawa, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Hamelin, Richard C" sort="Hamelin, Richard C" uniqKey="Hamelin R" first="Richard C." last="Hamelin">Richard C. Hamelin</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Tanguay, Philippe" sort="Tanguay, Philippe" uniqKey="Tanguay P" first="Philippe" last="Tanguay">Philippe Tanguay</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Invasive alien tree pathogens can cause significant economic losses as well as large-scale damage to natural ecosystems. Early detection to prevent their establishment and spread is an important approach used by several national plant protection organizations (NPPOs). Molecular detection tools targeting 10 of the most unwanted alien forest pathogens in Canada were developed as part of the TAIGA project (<ext-link ext-link-type="uri" xlink:href="http://taigaforesthealth.com/">http://taigaforesthealth.com/</ext-link>). Forest pathogens were selected following an independent prioritization. Specific TaqMan real-time PCR detection assays were designed to function under homogeneous conditions so that they may be used in 96- or 384-well plate format arrays for high-throughput testing of large numbers of samples against multiple targets. Assays were validated for 1) specificity, 2) sensitivity, 3) precision, and 4) robustness on environmental samples. All assays were highly specific when evaluated against a panel of pure cultures of target and phylogenetically closely-related species. Sensitivity, evaluated by assessing the limit of detection (with a threshold of 95% of positive samples), was found to be between one and ten target gene region copies. Precision or repeatability of each assay revealed a mean coefficient of variation of 3.4%. All assays successfully allowed detection of target pathogen on positive environmental samples, without any non-specific amplification. These molecular detection tools will allow for rapid and reliable detection of 10 of the most unwanted alien forest pathogens in Canada.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Santini, A" uniqKey="Santini A">A Santini</name></author><author><name sortKey="Ghelardini, L" uniqKey="Ghelardini L">L Ghelardini</name></author><author><name sortKey="De Pace, C" uniqKey="De Pace C">C De Pace</name></author><author><name sortKey="Desprez Loustau, Ml" uniqKey="Desprez Loustau M">ML Desprez-Loustau</name></author><author><name sortKey="Capretti, P" uniqKey="Capretti P">P Capretti</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Desprez Loustau, M L" uniqKey="Desprez Loustau M">M-L Desprez-Loustau</name></author><author><name sortKey="Drake, Ja" uniqKey="Drake J">JA Drake</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Heid, Ca" uniqKey="Heid C">CA 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Pryor</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="O Onnell, K" uniqKey="O Onnell K">K O’Donnell</name></author><author><name sortKey="Kistler, Hc" uniqKey="Kistler H">HC Kistler</name></author><author><name sortKey="Cigelnik, E" uniqKey="Cigelnik E">E Cigelnik</name></author><author><name sortKey="Ploetz, Rc" uniqKey="Ploetz R">RC Ploetz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="O Donnell, K" uniqKey="O Donnell K">K O'Donnell</name></author><author><name sortKey="Cigelnik, E" uniqKey="Cigelnik E">E Cigelnik</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Glass, Nl" uniqKey="Glass N">NL Glass</name></author><author><name sortKey="Donaldson, Gc" uniqKey="Donaldson G">GC Donaldson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vilgalys, R" uniqKey="Vilgalys R">R Vilgalys</name></author><author><name sortKey="Hester, M" uniqKey="Hester M">M Hester</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Carbone, I" uniqKey="Carbone I">I Carbone</name></author><author><name sortKey="Kohn, Lm" uniqKey="Kohn L">LM Kohn</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Andrew, M" uniqKey="Andrew M">M Andrew</name></author><author><name sortKey="Barua, R" uniqKey="Barua R">R Barua</name></author><author><name sortKey="Short, Sm" uniqKey="Short S">SM Short</name></author><author><name sortKey="Kohn, Lm" uniqKey="Kohn L">LM Kohn</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Canada</li></country></list><tree><country name="Canada"><noRegion><name sortKey="Lamarche, Josyanne" sort="Lamarche, Josyanne" uniqKey="Lamarche J" first="Josyanne" last="Lamarche">Josyanne Lamarche</name></noRegion><name sortKey="Alayon, Dario I O" sort="Alayon, Dario I O" uniqKey="Alayon D" first="Dario I. O." last="Alayon">Dario I. O. Alayon</name><name sortKey="Bilodeau, Guillaume J" sort="Bilodeau, Guillaume J" uniqKey="Bilodeau G" first="Guillaume J." last="Bilodeau">Guillaume J. Bilodeau</name><name sortKey="Briere, Stephan C" sort="Briere, Stephan C" uniqKey="Briere S" first="Stephan C." last="Brière">Stephan C. Brière</name><name sortKey="Coelho, Aaron" sort="Coelho, Aaron" uniqKey="Coelho A" first="Aaron" last="Coelho">Aaron Coelho</name><name sortKey="Dale, Angela L" sort="Dale, Angela L" uniqKey="Dale A" first="Angela L." last="Dale">Angela L. Dale</name><name sortKey="Dale, Angela L" sort="Dale, Angela L" uniqKey="Dale A" first="Angela L." last="Dale">Angela L. Dale</name><name sortKey="Feau, Nicolas" sort="Feau, Nicolas" uniqKey="Feau N" first="Nicolas" last="Feau">Nicolas Feau</name><name sortKey="Hamelin, Richard C" sort="Hamelin, Richard C" uniqKey="Hamelin R" first="Richard C." last="Hamelin">Richard C. Hamelin</name><name sortKey="Hamelin, Richard C" sort="Hamelin, Richard C" uniqKey="Hamelin R" first="Richard C." last="Hamelin">Richard C. Hamelin</name><name sortKey="Pelletier, Gervais" sort="Pelletier, Gervais" uniqKey="Pelletier G" first="Gervais" last="Pelletier">Gervais Pelletier</name><name sortKey="Potvin, Amelie" sort="Potvin, Amelie" uniqKey="Potvin A" first="Amélie" last="Potvin">Amélie Potvin</name><name sortKey="Stewart, Don" sort="Stewart, Don" uniqKey="Stewart D" first="Don" last="Stewart">Don Stewart</name><name sortKey="Tanguay, Philippe" sort="Tanguay, Philippe" uniqKey="Tanguay P" first="Philippe" last="Tanguay">Philippe Tanguay</name><name sortKey="Uzunovic, Adnan" sort="Uzunovic, Adnan" uniqKey="Uzunovic A" first="Adnan" last="Uzunovic">Adnan Uzunovic</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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